WebYou can use the cophenetic correlation coefficient to compare the results of clustering the same data set using different distance calculation methods or clustering algorithms. For example, you can use the cophenet function … WebMar 2, 2010 · 说明:利用pdist函数生成的Y和linkage函数生成的Z计算cophenet相关系数。 cophene检验一定算法下产生的二叉聚类树和实际情况的相符程度,就是检测二叉聚类树 …
Hierarchical clustering (scipy.cluster.hierarchy) — SciPy v0.9 ...
WebJun 16, 2024 · Y = scipy.spatial.distance.pdist ( (X,'cityblock'); #计算距离列表 Z = hierarchy.linkage (Y,'average'); #进行层次聚类 cluster.hierarchy.cophenet (Z,Y) #计算共表相关系数 1 2 3 其中距离矩阵Z的排列方式如下: 比如如下的距离矩阵 [1]: 变为如下方式的距离列表,即 Y 共表相关系数实际上就是计算两列距离列向量之间的 相关系数 ! 第一 … WebSep 5, 2016 · 说明:利用pdist函数生成的Y和linkage函数生成的Z计算cophenet相关系数。 cophene检验一定算法下产生的二叉聚类树和实际情况的相符程度,就是检测二叉聚类树中各元素间的距离和pdist计算产生的实际的距离之间有多大的相关性,另外也可以用inconsistent表示量化某个 ... holmsaasen kennel
Cophenetic correlation coefficient - MATLAB cophenet
WebThe cophenetic correlation between Z(:,3)and Yis defined as where: Yijis the distance between objects iand jin Y. Zijis the cophenetic distance between objects iand j, from … WebMar 24, 2024 · Description c = cophenet (Z,Y) computes the cophenetic correlation coefficient for the hierarchical cluster tree represented by Z. Z is the output of the linkage function. Y contains the distances or dissimilarities used to construct Z, as output by the pdist function. Z is a matrix of size (m–1)-by-3, with distance information in the third column. WebJan 18, 2015 · scipy.cluster.hierarchy.cophenet(Z, Y=None) [source] ¶ Calculates the cophenetic distances between each observation in the hierarchical clustering defined by … holmy